PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00476.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 306aa    MW: 33931.1 Da    PI: 9.4208
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00476.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.53.8e-34592001128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                              lp+G++F+Ptd+e++ e+L+ kv+++       ++++  +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r++
  Rsa1.0_00476.1_g00004.1  59 LPAGVKFDPTDQEVL-EHLEGKVRDDArklhplIDEFIrTIEGEnGICYTHPEKLP-GVSKDGTVRHFFHRPSKAYTTGTRKRRKV 142
                              799**********99.99******9996666553332224666657**********.666777899******************74 PP

                      NAM  79 k.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +       + +W++tgk+++vl+ +g++ g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Rsa1.0_00476.1_g00004.1 143 HtdsevggETRWHKTGKTRPVLT-GGRVRGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200
                              43455555778************.9*************6658999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-3853219IPR003441NAC domain
PROSITE profilePS5100533.47859219IPR003441NAC domain
PfamPF023652.7E-1560200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTWCNDRSDV QTVERIIPSP TAADSPAASF PVSCHKTCPS CGHKFKFHEQ AGIHDLPGLP  60
AGVKFDPTDQ EVLEHLEGKV RDDARKLHPL IDEFIRTIEG ENGICYTHPE KLPGVSKDGT  120
VRHFFHRPSK AYTTGTRKRR KVHTDSEVGG ETRWHKTGKT RPVLTGGRVR GYKKILVLYT  180
NYGKQKKPEK TNWVMHQYHL GTNEEEREGE LVVSKVFYQT QPRQCGGSVA AVATAKERPY  240
LHGHGHQLGG GGGGRHLHYH LHNVKGSGGG GSDGASEYYN NIPAIISFNQ TGIQNHLVHG  300
SQPFIP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566580.0DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696599.10.0PREDICTED: NAC domain-containing protein 73
SwissprotO494590.0NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A078HCI70.0A0A078HCI7_BRANA; BnaA01g08370D protein
STRINGBra011034.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-180NAC domain containing protein 73